FAMOUS

November 25, 2008, at 06:03 PM by annette -

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November 25, 2008, at 06:02 PM by annette -

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Job directory will be $WORKDIR/um/<job-id> by default

to:

Job directory will be $WORKDIR/um/<job-id> by default

November 25, 2008, at 06:02 PM by annette -

Changed lines 80-83 from:

Compilation will be done in the serial queue and the run will be done in one of the parallel queues.

Job directory will be $WORKDIR/um/<job-id> by default

Output will go to $HOME/um/umui_out for pathscale and $HOME/umui_out for PGI

to:

Compilation will be done in the serial queue and the run will be done in one of the parallel queues.
Job directory will be $WORKDIR/um/<job-id> by default
Output will go to $HOME/um/umui_out for pathscale and $HOME/umui_out for PGI

November 25, 2008, at 06:01 PM by annette -

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November 25, 2008, at 06:01 PM by annette -

Changed lines 36-37 from:

a. Make sure you have the correct compiler loaded.
[@

to:

a. Make sure you have the correct compiler loaded.

[@

Changed lines 41-43 from:

Note: PGI will be loaded by default when you log in to HECToR, unless you specifically change compiler in your .profile.
Note: An alternative way to swicth compilers is using the module command:
[@

to:

Note: PGI will be loaded by default when you log in to HECToR, unless you specifically change compiler in your .profile.

Note: An alternative way to swicth compilers is using the module command:

[@

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b. Check you are picking up the correct UM version:
[@

to:

b. Check you are picking up the correct UM version:

[@

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This should list several UM environment variables with the version number and UM installation you specified.

to:

This should list several UM environment variables with the version number and UM installation you specified.

November 25, 2008, at 06:00 PM by annette -

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November 25, 2008, at 05:59 PM by annette -

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1. Add the following lines to your ~/.profile on HECToR, uncommenting the TARGET_MC and UMDIR lines for the compiler you wish to use.

to:

1. Add the following lines to your ~/.profile on HECToR, uncommenting the TARGET_MC and UMDIR lines for the compiler you wish to use.

November 25, 2008, at 05:59 PM by annette -

Changed line 11 from:

1. Add the following lines to your ~/.profile on HECToR, uncommenting the TARGET and UMDIR lines for the compiler you wish to use.

to:

1. Add the following lines to your ~/.profile on HECToR, uncommenting the TARGET_MC and UMDIR lines for the compiler you wish to use.

November 25, 2008, at 05:58 PM by annette -

Changed lines 35-36 from:

3. Make sure you have the correct compiler loaded. You can see this by typing

to:

2. To check this has been set up properly:
a. Make sure you have the correct compiler loaded.

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Note: If loadcomp doesn’t work you may need to add this line instead:

to:

Note: An alternative way to swicth compilers is using the module command:

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to:

b. Check you are picking up the correct UM version:

env | grep um

This should list several UM environment variables with the version number and UM installation you specified.

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4. Open up the umui on puma, and copy one of the following jobs to your own directory. They are all under owner annette.

xcpsc : previous standard release (pathscale compiler)

to:

3. Open up the umui on puma, and copy one of the following jobs to your own directory. They are all under owner annette.

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5. Edit your job in the following places:

to:

4. Edit your job in the following places:

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6. Make sure your job is set to compile only and click on the SUBMIT button.

to:

5. Set your job to “compile and run” and ensure the submission method is “qsub for PBS pro (Cray XT4)”. Set the number of processors and time limits as usual and click on the SUBMIT button.

Compilation will be done in the serial queue and the run will be done in one of the parallel queues.

Job directory will be $WORKDIR/um/<job-id> by default

Changed lines 79-85 from:

Job directory will be $WORKDIR/um/<job-id> by default

7. If compilation is successful, set your job to run from existing exec. Submission method needs to be ‘qsub’ for PBS pro. Set the number of compilers and time limit as normal, and SUBMIT.

8. To check on the progress of a job type qstat and to delete a job use qdel

to:

6. To check on the progress of a job type qstat and to delete a job use qdel

November 25, 2008, at 05:50 PM by annette -

Changed lines 11-13 from:

1. Copy the setvars files to your home directory, and create symbolic links:

to:

1. Add the following lines to your ~/.profile on HECToR, uncommenting the TARGET and UMDIR lines for the compiler you wish to use.

Deleted lines 13-23:

cp ~annette/setvars_4.5_pgi ~annette/setvars_4.5_ps $HOME
cd $HOME
ln -s setvars_4.5_ps setvars_4.5
ln -s setvars_4.5_ps setvars
@]

Note: setvars_4.5_ps is for the pathscale compiler, which is recommended for the UM as it runs slightly faster.

2. Add the following lines to your ~/.profile on HECToR, uncommenting the TARGET and UMDIR lines for the compiler you wish to use.

[@

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UMSETUP=$HOME/setvars
. $UMSETUP

to:

Choose compiler

Deleted lines 17-18:

export UMDIR=/work/n02/n02/hum

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export UMDIR=/work/n02/n02/simon/PGI/um

to:

Choose UM installation

export UMDIR=/work/n02/n02/hum

export UMDIR=/work/n02/n02/simon/PGI/um # 4.5 PGI only

UMSETUP=$UMDIR/setvars_4.5; export UMSETUP

Load setup

if [ -f $UMSETUP ]
then

   . $UMSETUP  #  set up UM environment variables

fi

November 25, 2008, at 02:48 PM by annette -

Added line 37:

. /work/n02/n02/hum/bin/loadcomp

Main.RunningHECToR History